That looks bad. Have not seen this before. When is this happening? Does this happen on bootup or shutdown?

It keeps happening over and over in my log file.

I think I need a "clean" OpenEdit instance.  Is there a way to do that? 

You can just download a ROOT.war file from the OE site. Then you can manually upgrade by copying the WEB-INF/base and WEB-INF/lib directory to your site.

 What about directories like "blog" and "apps".  What if I don't want the blog plugin anymore?  Am I safe to delete that?

Yes. OpenEdit is mostly driven by folders. There might be a jar file that does with the blog that you can remove.

 I tried doing the clean version and the site didn't come up correctly once I copied everything back.  

I had that problem too. After searching for useful informations, I found some hints, that were helping me:

The webserver (tomcat in my case) has been started more than once. Previous sessions weren't stopped properly and some processes still running in the background.

After killing the zombie processes, the problem was gone.

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